1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatttatgctcaattaagaacattcattccattccttgcaagtaattagtaaataattttaattatattttaggtcttgttaagttattcgattaagattatagaaaaacttcaaatagattgtaaataacacagttttttttttttcttttaatagaagtatttttagtttattatatatgtgatgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAAAGCCTGGTTCGAATGTGTTCATATCTGCTGCGTCCGGTGCGGTTGGTAT
species | Glycine max |
transcript | GLYMA12G31970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAG GGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGEST: gi|209702812|gb|BW675708.1|BW675708
genomic: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAGgtatttatgc ... atgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAG
EST: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAG GGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAAEST: gi|298195000|gb|HO043528.1|HO043528
genomic: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAGgtatttatgc ... atgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAA
EST: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAG GGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAAEST: gi|26047297|gb|CA784133.1|CA784133
genomic: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAGgtatttatgc ... atgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAA
EST: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAG GGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAAEST: gi|13481338|gb|BG510681.1|BG510681
genomic: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAGgtatttatgc ... atgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAA
EST: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAG GGGTGCCAGGGTTTGCGGCGTGGGTGGG-ATAAGTGGTTCTGGGAGACCCA
genomic: AATTGACGCTGCTAGTGGAATTTCGCTGCCGGATTATCTAAGTGCCTTAGgtatttatgc ... atgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATA-GTGGTTCTGGGAGACCCA
ttttttttcttttaatagaagtatttttagtttattatatatgtgatgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAAAGCCTGGTTCGAATGTGTTCATATCTGCTGCGTCCGGTGCGGTTGGTAT
ttttaat putative branch site (score: 3)
tttcttttaatagaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatgctcaattaagaacattcattccattccttgcaagtaattagtaaataattttaattatattttaggtcttgttaagttattcgattaagattatagaaaaacttcaaatagattgtaaataacacagttttttttttttcttttaatagaagtatttttagtttattatatatgtgatgcgtgcagGGGTGCCAGGGTTTGCGGCGTGGGTGGGTATAGTGGTTCTGGGAGACCCAAAGCCTGGTTCGAATGTGTTCATATCTGCTGCGTCCGGTGCGGTTGGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC