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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatcatctatatttgtctgtaaatttctgatgatgttgctggttatctgttggatgcaatttgtgtgaaactagcaaaaatgatagtcctgctttatcatgtactactccatggggacttatttgttcaccttgcaaatgattgcattaatggttcttcttggttaaaaagttgaacttacacatgcagGTGGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATTGATGTACATT

Basic information

species Glycine max
transcript GLYMA12G31080.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925473|gb|AW831499.1|AW831499
EST:     CAATACTGCTGTTGATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAG                         GTGGANGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTT
genomic: CAATACTGCTGTTGATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAGgtttgatcat ... acacatgcagGTGGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTT
EST: gi|4437151|gb|AI523016.1|AI523016
EST:     CAATACTGCTGTTGATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAG                         GTGGAGGGGATTTTCAGAA
genomic: CAATACTGCTGTTGATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAGgtttgatcat ... acacatgcagGTGGAGGGGATTTTCAGAA
EST: gi|209716808|gb|BW682250.1|BW682250
EST:     CAATACTGCTGTTGATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAG                         GTGGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTT
genomic: CAATACTGCTGTTGATGCAAAGGCATCTGTATGTTCAAGGAGGGTTGCAGgtttgatcat ... acacatgcagGTGGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatgattgcattaatggttcttcttggttaaaaagttgaacttacacatgcagGTGGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGTTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATTGATGTACATT
                                        aacttac  putative branch site (score: 2)
                             ttaaaaagtt  TA-rich tract