1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacatttcactagaacaaattttgaagtaggcagtggcagtgcacaattcaaatattctaatttcaaaataaaatatgatcacattgaatcaatttacagGAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGATATGGAGAAAGTGATCCAAACCCCAAACGCTCACTGAAAAGTGAAGCAC
species | Glycine max |
transcript | GLYMA12G30970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAA GAATTAATAGATGAATTGGGTATATATCTTCTGCAATATGACCGGGCTGGAEST: gi|192295668|gb|FG990522.1|FG990522
genomic: TTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAAgtaattaata ... caatttacagGAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGA
EST: TTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAA GAATTAATAGATGAATTGGGTATATATCTTCTGCAATATGACCGGGCTGGAEST: gi|209724987|gb|BW662990.1|BW662990
genomic: TTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAAgtaattaata ... caatttacagGAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGA
EST: TTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAA GAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGA
genomic: TTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAAgtaattaata ... caatttacagGAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGA
aattcaaatattctaatttcaaaataaaatatgatcacattgaatcaatttacagGAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGATATGGAGAAAGTGATCCAAACCCCAAACGCTCACTGAAAAGTGAAGCAC
ttctaat putative branch site (score: 2)
aaatattctaatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatttcactagaacaaattttgaagtaggcagtggcagtgcacaattcaaatattctaatttcaaaataaaatatgatcacattgaatcaatttacagGAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGATATGGAGAAAGTGATCCAAACCCCAAACGCTCACTGAAAAGTGAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - -agaacaaa
- - - - - - - - - - - - - - - - - - - - tgcacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa