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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctgcacccttttctgttttttaatgtctttgattttctgtgttgtaaccgatgctctgcttgtggcgtgcgtgatgctcattctttgtgctgattgcagGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAG

Basic information

species Glycine max
transcript GLYMA12G29750.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------gtatctgcacccttttctgttttttaatgtctttgattttctgtgttgtaaccgatgctctgcttgtggcgtgcgtgatgctcattctttgtgctgattgcagGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAG
                            |  ||   |   |||| ||  || || | |||  ||   | ||| | ||   |  |  | |  || ||    |  |||  ||   ||  |||||   ||||||||||||||||| |||||||| ||||| ||||| || |||||||||||  | |||
gtgagaatattatgccagtttttcttgtgggtcgtgattattttttggcttatactctctgcgagaatgtgtttggttttc--ttttttctttttgattggaatgacact---tcaatgtgcaacttgcagGTGTTCTTCATTTTCACTCTTTATAATACTTCCAACCACAATGATCAACTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601385|gb|DB956691.1|DB956691
EST:     ATTCCTGCATTCGAGTCATGGATAATGGAAGGGAGAGCGTTAACCGAAAA                         GTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTA
genomic: ATTCCTGCATTCGAGTCATGGATAATGGAAGGGAGAGCGTTAACCGAAAAgtatctgcac ... ctgattgcagGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTA
EST: gi|209722675|gb|BW654682.1|BW654682
EST:     ATTCCTGCATTCGAGTCATGGATAATGGAAGGGAGAGCGTTAACCGAAAA                         GTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTA
genomic: ATTCCTGCATTCGAGTCATGGATAATGGAAGGGAGAGCGTTAACCGAAAAgtatctgcac ... ctgattgcagGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTA
EST: gi|209705115|gb|BW653338.1|BW653338
EST:     ATTCCTGCATTCGAGTCATGGATAATGGAAGGGAGAGCGTTAACCGAAAA                         GTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTA
genomic: ATTCCTGCATTCGAGTCATGGATAATGGAAGGGAGAGCGTTAACCGAAAAgtatctgcac ... ctgattgcagGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaccgatgctctgcttgtggcgtgcgtgatgctcattctttgtgctgattgcagGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAG
                                   attcttt  TA-rich tract