1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttagtgtttatcaactcctcacacaaactcgtcttgattgctgttcatatctctttctgggattgctacctcaagcaacatgactcgtacctctatttcttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGG
species | Glycine max |
transcript | GLYMA12G29450.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGCANNNNNNNGTTCTGAGTCATTCTGGCAAACCAATATATTCTAG GTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATEST: gi|20207861|gb|BQ133950.1|BQ133950
genomic: AAGAAGCATTTTTTTGTTCTGAGTCATTCTGGCAAACCAATATATTCTAGgttagtgttt ... cttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAAT
EST: AAGAAGCANNNNNNNGTTCTGAGTCATTCTGGCAAACCAATATATTCTAG GTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATEST: gi|23731715|gb|BU763998.1|BU763998
genomic: AAGAAGCATTTTTTTGTTCTGAGTCATTCTGGCAAACCAATATATTCTAGgttagtgttt ... cttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAAT
EST: AAGAAGCANNNNNNNGTTCTGAGTCATTCTGGCAAACCAATATATTCTAG GTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATEST: gi|9204039|gb|BE330263.1|BE330263
genomic: AAGAAGCATTTTTTTGTTCTGAGTCATTCTGGCAAACCAATATATTCTAGgttagtgttt ... cttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAAT
EST: AAGAAGCANNNNNNNGTTCTGAGTCATTCTGGCAAACCAATATATTCTAG GTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATEST: gi|213617331|gb|DB965202.1|DB965202
genomic: AAGAAGCATTTTTTTGTTCTGAGTCATTCTGGCAAACCAATATATTCTAGgttagtgttt ... cttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAAT
EST: AAGAAGCANNNNNNNGTTCTGAGTCATTCTGGCAAACCAATATATTCTAG GTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTT
genomic: AAGAAGCATTTTTTTGTTCTGAGTCATTCTGGCAAACCAATATATTCTAGgttagtgttt ... cttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTT
tttctgggattgctacctcaagcaacatgactcgtacctctatttcttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGG
cctctatttcttgttt CT-rich tract
tatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtttatcaactcctcacacaaactcgtcttgattgctgttcatatctctttctgggattgctacctcaagcaacatgactcgtacctctatttcttgtttcagGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA