1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cacaaagggcatataaagatgctatgctatgagttgcatatactattaagtggattaaaatttctattataattttctaacacatttgcaatttcaacagTGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTATATTGGTCACCCCTCTTGGTGCTCTTAGCATTATTATCAG
species | Glycine max |
transcript | GLYMA12G28940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGTTATTCTTACTTGTATGAGCCGCTTTGGTGGGTGGGAATGATAACAA TGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTAEST: gi|208302426|gb|GE097041.1|GE097041
genomic: AGGTTATTCTTACTTGTATGAGCCGCTTTGGTGGGTGGGAATGATAACAAgtgagtaata ... atttcaacagTGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTA
EST: AGGTTATTCTTACTTGTATGAGCCGCTTTGGTGGGTGGGAATGATAACAA TGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTAEST: gi|193662764|gb|FK606156.1|FK606156
genomic: AGGTTATTCTTACTTGTATGAGCCGCTTTGGTGGGTGGGAATGATAACAAgtgagtaata ... atttcaacagTGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTA
EST: TGGGAATGATAACAA TGA-TNTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTA
genomic: TGGGAATGATAACAAgtgagtaata ... atttcaacagTGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTA
ttaagtggattaaaatttctattataattttctaacacatttgcaatttcaacagTGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTATATTGGTCACCCCTCTTGGTGCTCTTAGCATTATTATCAG
ttctaac putative branch site (score: 1)
attaaaatttctatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaaagggcatataaagatgctatgctatgagttgcatatactattaagtggattaaaatttctattataattttctaacacatttgcaatttcaacagTGATTGTTGGGGAGATTGCCAATTTTGCAGCTTATGCATTTGCCCCAGCTATATTGGTCACCCCTCTTGGTGCTCTTAGCATTATTATCAG
- - - - gcatata
- - - - - - - - - - -ctatgct
- - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacat