1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttaaagtgtgttgttactccgaacccagctgtggaattgccattaactgctgaaaatgtagaaagtgtattggatgaaattcgaccctatctcattgcagACGGTGGGAATGTGGCTTTACATCAAATTGATGGCAATGTTGTGCGCTTGAAGCTACAGGGCGCATGTGGTTCCTGTCCAAGTTCTGTTACCACCATGAA
species | Glycine max |
transcript | GLYMA12G28900.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG ACGGTGGGAATGTGGCTTTACATCAAATTGATGGCAATGTTGTGCGCTTGAEST: gi|254317828|gb|GR826812.1|GR826812
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... ctcattgcagACGGTGGGAATGTGGCTTTACATCAAATTGATGGCAATGTTGTGCGCTTGA
EST: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG ACGGTGGGAATGTGGCTTTACATCAAATTGATGGCAATGTTGTGCGCTTGA
genomic: GAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTGgttagtagtt ... ctcattgcagACGGTGGGAATGTGGCTTTACATCAAATTGATGGCAATGTTGTGCGCTTGA
actgctgaaaatgtagaaagtgtattggatgaaattcgaccctatctcattgcagACGGTGGGAATGTGGCTTTACATCAAATTGATGGCAATGTTGTGCGCTTGAAGCTACAGGGCGCATGTGGTTCCTGTCCAAGTTCTGTTACCACCATGAA
cattaac putative branch site (score: 2)
ccctatctc putative PPT
aaaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaagtgtgttgttactccgaacccagctgtggaattgccattaactgctgaaaatgtagaaagtgtattggatgaaattcgaccctatctcattgcagACGGTGGGAATGTGGCTTTACATCAAATTGATGGCAATGTTGTGCGCTTGAAGCTACAGGGCGCATGTGGTTCCTGTCCAAGTTCTGTTACCACCATGAA
- - -gtgtgtt
- - - - - - - - - -cgaaccc
- - - - - - - - - - - - - -gctgtgg
- - - - - - - - - - - - - - - - - - -tgccatt
- - - - - - - - - - - - - - - - - - - - - - - ctgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgaccc