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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactatactcttccattctcatttccacgcatcgtttctgtctcccaacttgatttgatttgatttgatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTC

Basic information

species Glycine max
transcript GLYMA12G28670.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28670.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------------------------gtaaacta-tactcttccattctcatttccacgcatcgtttctgtctcc----caacttgatttgatttgatttgattttt--------cagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTC
                                                                            ||  |  | | | | |  ||    |    || |  | ||| || |||      ||| | |  ||  | |    ||  | ||        |||| ||||||||| ||||||||||||||| |||| |||||||| ||||||||| |   | | | | |   ||||||  |||||  |||   ||||||||| |
gtaagattttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccataaatgtataaaaacaagtgttgttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079367|gb|GD877095.1|GD877095
EST:     ACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: ACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|12689164|gb|BG155500.1|BG155500
EST:     GACAACGCTTTGTTCTCATCTTCTGCCATGGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: GACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|254316505|gb|GR828042.1|GR828042
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccacgcatcgtttctgtctcccaacttgatttgatttgatttgatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTC
                                         atttgat  putative branch site (score: 5)
                                               tttttc  CT-rich tract
                               atttgatttgatttga  TA-rich tract