1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactgtgtaatatggctatgctttgcttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG
species | Glycine max |
transcript | GLYMA12G28670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|24136950|gb|BU927460.1|BU927460
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|298172183|gb|HO021775.1|HO021775
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|192315107|gb|FK009931.1|FK009931
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|6134030|gb|AW132480.1|AW132480
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|192333250|gb|FK026131.1|FK026131
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|213618494|gb|DB963395.1|DB963395
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|298184141|gb|HO029354.1|HO029354
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|41145772|gb|CK605983.1|CK605983
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAACCGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|213604365|gb|DB970597.1|DB970597
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|24135648|gb|BU926158.1|BU926158
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|213587115|gb|DB959536.1|DB959536
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|7233496|gb|AW568841.1|AW568841
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|209709460|gb|BW668376.1|BW668376
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|298191545|gb|HO039024.1|HO039024
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|208215289|gb|GE011072.1|GE011072
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: TGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|6134008|gb|AW132458.1|AW132458
genomic: TGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCEST: gi|15814101|gb|BI786376.1|BI786376
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
EST: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAG GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
genomic: GTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGgtactgtgta ... ctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATC
cttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG
tcttaat putative branch site (score: 3)
tttactgcttctcctt putative PPT
ttcttaatcaatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtgtaatatggctatgctttgcttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA