Sequence
atgc intronic sequence ATGC exonic sequence...ttaaaatcttgagatgaccccatttttatttattttttgaattttagtaatgatttgtttcatcattaattcttacttgcttgttgttaatgtgatgcagCTTGATGATTGGGTTCTGTGTCGTATCTATAAGAAGAACTCAAGTGCGCAAAAGGTTGAGGCAAATCTTTTGGCTATGGAATGTAGCAATGGGTCATCAC
Basic information
species | Glycine max |
transcript | GLYMA12G22880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37994475|gb|CF806221.1|CF806221EST: AGTATCGCCTTCTCGACTCTTCCCGCAAACACAACCTCGGAACCGCANAG CTTGATGATTGGGTTCT
genomic: AGTATCGCCTTCTCGACTCTTCCCGCAAACACAACCTCGGAACCGCAAAGgtacataatt ... tgtgatgcagCTTGATGATTGGGTTCT
EST:
gi|19346628|gb|BM891508.1|BM891508EST: AGTATCGCCTTCTCGACTCTTCCCGCAAACACAACCTCGGAACCGCAAAG CTTGATGATTGGGTTCTGTGTCGTATCTATAAGAAGAACTCAAGTGCGCAA
genomic: AGTATCGCCTTCTCGACTCTTCCCGCAAACACAACCTCGGAACCGCAAAGgtacataatt ... tgtgatgcagCTTGATGATTGGGTTCTGTGTCGTATCTATAAGAAGAACTCAAGTGCGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtaatgatttgtttcatcattaattcttacttgcttgttgttaatgtgatgcagCTTGATGATTGGGTTCTGTGTCGTATCTATAAGAAGAACTCAAGTGCGCAAAAGGTTGAGGCAAATCTTTTGGCTATGGAATGTAGCAATGGGTCATCAC
tttcatcattaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaaaatcttgagatgaccccatttttatttattttttgaattttagtaatgatttgtttcatcattaattcttacttgcttgttgttaatgtgatgcagCTTGATGATTGGGTTCTGTGTCGTATCTATAAGAAGAACTCAAGTGCGCAAAAGGTTGAGGCAAATCTTTTGGCTATGGAATGTAGCAATGGGTCATCAC
- - - - - - - - -ccccatt
- - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgtt