Sequence
atgc intronic sequence ATGC exonic sequence...ttctttcagaattgtacctgagcttatgacttttttatttttcttttttgaaaacgatttctggtattgaattgctcttccctttcaaaatcttttacagAAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGAGGAGACGCGGAGATATTCATGAAATTTGCAAAGTGCGGCTACAAGGAG
Basic information
species | Glycine max |
transcript | GLYMA12G22680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G22680.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G108364_T01 (Zea mays), 3'ss of exon 2
--ttctttcagaattgtacctgagcttatgacttttttatttttcttttttgaaaacgatttctggtattgaattgctcttccctttcaaaatcttttacagAAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGAGGAGACGCGGAGATATTCATGAAATTTGCAAAGTGCGGCTACAAGGAG
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ctctgcgcgtgtacagcatccaaaat-gtgactcttgtatagttgctcaactaggtgttttgattgtactgt-ttatttacatcattttgctttgtatccagGAATCAACCTCTGCGCGTGTACAGCATGGTGAAATATGCTGCAATAGCACGAGGCGATGCTGAAATCTTCATGAAATTTGCAAGAGCTGGATACAAAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208091825|gb|GD887140.1|GD887140EST: AACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAG AAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCG
genomic: AACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAGgtataatatt ... tcttttacagAAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgaaaacgatttctggtattgaattgctcttccctttcaaaatcttttacagAAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGAGGAGACGCGGAGATATTCATGAAATTTGCAAAGTGCGGCTACAAGGAG
tcttttac CT-rich tract
tttcaaaatctttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctttcagaattgtacctgagcttatgacttttttatttttcttttttgaaaacgatttctggtattgaattgctcttccctttcaaaatcttttacagAAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGAGGAGACGCGGAGATATTCATGAAATTTGCAAAGTGCGGCTACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - -gtacctg
- - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgg