1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttatgtctcacggttgtcaattttcctaaggaggttttgctcagtcatatatgcttccttttcctattggcattgacataatttcatctcctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTTGGTCAACTTGGAGTG
species | Glycine max |
transcript | GLYMA12G17950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTT AAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGTEST: gi|37996558|gb|CF808147.1|CF808147
genomic: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTTgtaagtatct ... cctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGT
EST: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTT AAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGTEST: gi|213587879|gb|DB959703.1|DB959703
genomic: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTTgtaagtatct ... cctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGT
EST: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTT AAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGTEST: gi|192311716|gb|FK003577.1|FK003577
genomic: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTTgtaagtatct ... cctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGT
EST: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTT AAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGT
genomic: TCGAAGATCATTGAAGTGGACAACAATGTACGGGAGGATCGTGCACTCTTgtaagtatct ... cctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGT
tcatatatgcttccttttcctattggcattgacataatttcatctcctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTTGGTCAACTTGGAGTG
cattgac putative branch site (score: 3)
tttcatctcctctacc putative PPT
ataatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgtctcacggttgtcaattttcctaaggaggttttgctcagtcatatatgcttccttttcctattggcattgacataatttcatctcctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTTGGTCAACTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - -ggttttg