Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58017532|gb|CX704274.1|CX704274EST: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTG GTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
genomic: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGgtaagagttg ... atttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
EST:
gi|58021465|gb|CX708206.1|CX708206EST: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTG GTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
genomic: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGgtaagagttg ... atttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
EST:
gi|22930630|gb|BU547777.1|BU547777EST: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTG GTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
genomic: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGgtaagagttg ... atttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
EST:
gi|58025311|gb|CX712052.1|CX712052EST: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTG GTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
genomic: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGgtaagagttg ... atttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
EST:
gi|193576168|gb|FK532677.1|FK532677EST: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTG GTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
genomic: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGgtaagagttg ... atttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
EST:
gi|207695386|gb|GD678127.1|GD678127EST: CTCTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTG GTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
genomic: CACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGgtaagagttg ... atttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
EST:
gi|22933437|gb|BU550576.1|BU550576EST: GTTTTACACTG GTGCTAGAGTTNNAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
genomic: GTTTTACACTGgtaagagttg ... atttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttgagtttttggtctgttattgaaaggcttggttggagtttccatttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGACGGCTGTTCTTCATGCAAGGGGAAATCGAACTTGGTATGCCTCAACAAAC
tttccattt CT-rich tract
ttattgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagagttgtgaatcatggacctgatgagttgagtttttggtctgttattgaaaggcttggttggagtttccatttgattagGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGACGGCTGTTCTTCATGCAAGGGGAAATCGAACTTGGTATGCCTCAACAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT