Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209729041|gb|BW651779.1|BW651779EST: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAG GTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
genomic: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAGgtgcaacact ... ttatcttcagGTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
EST:
gi|22933739|gb|BU550878.1|BU550878EST: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAG GTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
genomic: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAGgtgcaacact ... ttatcttcagGTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
EST:
gi|16106290|gb|BI894030.1|BI894030EST: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAG GTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
genomic: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAGgtgcaacact ... ttatcttcagGTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
EST:
gi|42723090|gb|CK768989.1|CK768989EST: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAG GTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
genomic: GTTATGCATTAATTAGCGCTGGAATTGATGTCCAAGCTTTACTGCAGAAGgtgcaacact ... ttatcttcagGTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaatttaaaacaaagcaattgcttcgggttaataaattgcgtgtttatcttcagGTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTGGCATATGCTGCACATAAAGCTGCATCTCCAATTAGGTTTCCACCCACAG
ggttaat putative branch site (score: 4)
tttatcttc putative PPT
ttaataaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcaacactaaaactaaacctaatgtagattgcaatttaatttaaaacaaagcaattgcttcgggttaataaattgcgtgtttatcttcagGTTGGAATCTCAACTGATGCGACTGGCGAAAAAGTTGGTACCTTTGCTTTGGCATATGCTGCACATAAAGCTGCATCTCCAATTAGGTTTCCACCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC