1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccttaaatttttatcacctagatttatcacttgttgattctaacatattcaagttagtgtgggcacacactttctattaacaaatgttgtattgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTTAGTGATGGGTGTGATAGAGAGGGACGGCTACACACTTTATTGCACCGT
species | Glycine max |
transcript | GLYMA12G09750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTG GTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTEST: gi|16348435|gb|BI974030.1|BI974030
genomic: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTGgtaagagcta ... attgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
EST: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTG GTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTEST: gi|192318583|gb|FK008285.1|FK008285
genomic: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTGgtaagagcta ... attgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
EST: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTG GTCCTGGAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTEST: gi|9986801|gb|BE660909.1|BE660909
genomic: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTGgtaagagcta ... attgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
EST: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTG GTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTEST: gi|192294787|gb|FG987476.1|FG987476
genomic: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTGgtaagagcta ... attgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
EST: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTG GTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTEST: gi|21889516|gb|BQ742729.1|BQ742729
genomic: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTGgtaagagcta ... attgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
EST: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTG GTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTEST: gi|192318582|gb|FK008284.1|FK008284
genomic: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTGgtaagagcta ... attgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
EST: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTG GTCCTGGAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
genomic: GGGTAGAGAGGAGTTTCGCAAGTATCATTCTGCAGCCATTGATGTGCCTGgtaagagcta ... attgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATT
tattcaagttagtgtgggcacacactttctattaacaaatgttgtattgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTTAGTGATGGGTGTGATAGAGAGGGACGGCTACACACTTTATTGCACCGT
tattaac putative branch site (score: 1)
tttctattaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttaaatttttatcacctagatttatcacttgttgattctaacatattcaagttagtgtgggcacacactttctattaacaaatgttgtattgttgtagGTCCTGAAGTTGATAGATTGGCAGCAATGGCAGGGAAGTATAAAGTACATTTAGTGATGGGTGTGATAGAGAGGGACGGCTACACACTTTATTGCACCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggg