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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagcagactcattgtatctaatttcaaaccattctggtccaattttataaattctatcaagtgtcagttttggcaatttgttaccttgtgctgatcattgcaaattttgtatattgattcattggtctagtaatttagcttcatgtgctttttctaatatttgtagATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAAGAGTGGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTG

Basic information

species Glycine max
transcript GLYMA12G09720.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601443|gb|DB956721.1|DB956721
EST:     ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAG                         ATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAG
genomic: ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAGgtgcagcaga ... atatttgtagATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
EST: gi|15288064|gb|BI471955.1|BI471955
EST:     CAACAACACTTCTCAACAAACTGAGCAG                         ATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
genomic: CAACAACACTTCTCAACAAACTGAGCAGgtgcagcaga ... atatttgtagATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
EST: gi|192296222|gb|FG989763.1|FG989763
EST:     ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAG                         ATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
genomic: ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAGgtgcagcaga ... atatttgtagATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
EST: gi|8826606|gb|BE210336.1|BE210336
EST:     ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAG                         ATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
genomic: ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAGgtgcagcaga ... atatttgtagATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
EST: gi|5760499|gb|AI965862.1|AI965862
EST:     ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAG                         ATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA
genomic: ATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACTGAGCAGgtgcagcaga ... atatttgtagATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgattcattggtctagtaatttagcttcatgtgctttttctaatatttgtagATCATAGAGACTGACAATGATGCTGGTTTTTTGAAACTTACAAGAACCCAAGAGTGGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTG
                                        ttctaat  putative branch site (score: 2)
                                     tttttctaatatttgt  TA-rich tract