1 5' 3' | 2 5' 3' | 3 5' 3' |
...actctatctattgatgtttcacatcatgtgtctttgtctatttaagtcccttcacttagtttcacacgatgatattggaactttcatttctatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGACAGTGCAT
species | Glycine max |
transcript | GLYMA12G09680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|58019488|gb|CX706230.1|CX706230
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|298191166|gb|HO038645.1|HO038645
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGGGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|19270002|gb|BM886258.1|BM886258
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|16996834|gb|BM086206.1|BM086206
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|20811964|gb|BQ296442.1|BQ296442
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|22523664|gb|BU082475.1|BU082475
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|58016376|gb|CX703118.1|CX703118
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|16106385|gb|BI894125.1|BI894125
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|5607011|gb|AI901109.1|AI901109
genomic: GCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGCGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGACAATATTGGAGAGAGGTGACEST: gi|193359955|gb|FK327161.1|FK327161
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|16348428|gb|BI974023.1|BI974023
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|308098861|gb|HO760702.1|HO760702
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|213598752|gb|DB964290.1|DB964290
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACEST: gi|15813797|gb|BI786072.1|BI786072
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
EST: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAG ATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
genomic: GTAATACGAGTGCCGATACCCTCAATCGTGTGAGGGGAGAAGTTGGTGAGgtaagtacat ... tatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGAC
gtcccttcacttagtttcacacgatgatattggaactttcatttctatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGACAGTGCAT
ctttcatttctatc CT-rich tract
atgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctatctattgatgtttcacatcatgtgtctttgtctatttaagtcccttcacttagtttcacacgatgatattggaactttcatttctatcatacagATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGACAGTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - -tgatgtt
- - - - - - - - - -cacatca
- - - - - - - - - - - - - - -gtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcacac