1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagtgtagagaaaggtgctacctcttgtttttagtgtttgtcaacctttaggtttgtgcttgacaatacctatgttgtttactaattttctgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
species | Glycine max |
transcript | GLYMA12G09600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|16346323|gb|BI971918.1|BI971918
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|151398999|gb|EV268870.1|EV268870
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|192326512|gb|FK018819.1|FK018819
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|5126760|gb|AI748496.1|AI748496
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|10253437|gb|BE821203.1|BE821203
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|192301404|gb|FG998396.1|FG998396
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|151411066|gb|EV280877.1|EV280877
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATGCTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAGGTTGGAGAAGCTTGCTCGCAAGEST: gi|151411525|gb|EV281336.1|EV281336
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|151412650|gb|EV282462.1|EV282462
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|33390403|gb|CA853598.1|CA853598
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|31471738|gb|CD413766.1|CD413766
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAAAGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGEST: gi|31468078|gb|CD410106.1|CD410106
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
EST: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAG AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
genomic: GAAAAATACTGAGCGAGGAGGAAAAGGCTGCAGAAAATGCTTACTTTAAGgtaacctcga ... tgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
ctttaggtttgtgcttgacaatacctatgttgtttactaattttctgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
tactaat putative branch site (score: 1)
ttttctgt CT-rich tract
ttgtttactaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtgtagagaaaggtgctacctcttgtttttagtgtttgtcaacctttaggtttgtgcttgacaatacctatgttgtttactaattttctgtattgtagAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - -tgctacc
- - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctatgt