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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagactttgcaactagtttacttgtgctgctttagaatcaaattttcttttttgattattagtgatttggtgtattgaatttttgtttgtgcagCAAGCACTGTGATCTTAATTAATAAGACGATAAGCACCTTCGGTTGGCTTTTAAATGTGGTAGTTGTTTTTTCTTTCTTTTGCTTCTTTATTCGGTTCTT

Basic information

species Glycine max
transcript GLYMA12G09500.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937938|gb|BQ081485.1|BQ081485
EST:     GATCTCTACTGAGCAATGCTGGCCTTGAAGTTGGGAACTGGGAATTTAAG                         CAAGCACTGTGATCTTAATTAATAAGACGATA
genomic: GATCTCTACTGAGCAATGCTGGCCTTGAAGTTGGGAACTGGGAATTTAAGgtagactttg ... gtttgtgcagCAAGCACTGTGATCTTAATTAATAAGACGATA
EST: gi|7692840|gb|AW760939.1|AW760939
EST:     GATCTCTACTGAGCAATGCTGGCCTTGAAGTTGGGAACTGGGAATTTAAG                         CAAGCACTGTGATCTTAATTAATAAGACGATAAGCACCTTCGGTTGGCTTT
genomic: GATCTCTACTGAGCAATGCTGGCCTTGAAGTTGGGAACTGGGAATTTAAGgtagactttg ... gtttgtgcagCAAGCACTGTGATCTTAATTAATAAGACGATAAGCACCTTCGGTTGGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattttcttttttgattattagtgatttggtgtattgaatttttgtttgtgcagCAAGCACTGTGATCTTAATTAATAAGACGATAAGCACCTTCGGTTGGCTTTTAAATGTGGTAGTTGTTTTTTCTTTCTTTTGCTTCTTTATTCGGTTCTT
          ttttgat  putative branch site (score: 4)
                                        tttttgttt  putative PPT
        ttttttgattattagt  TA-rich tract