1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagttccaaatgcactgttaaccattttctcttttgatgtccattgattattttttgtcagtcccagtgtacttacatgacagtgatttatgtttaacagTACAGAATGGCTCCGCAGTGATTCAAGAAGAACAGTAGTAGGATTAGATTTGGATCTTGAGGCACTCAATTGGTGCATGGAAAGCAACATACCTAAAGTT
species | Glycine max |
transcript | GLYMA12G09340.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGATGCCCCTCCATCTTCAAGAAGATTTCTGTGGCACGGCGCTTCTTAG TACAGAATGGCTCCGCAGTGATTCAAGAAGAACAGTAGTAGGATTAGATTT
genomic: AGGATGCCCCTCCATCTTCAAGAAGATTTCTGTGGCACGGCGCTTCTTAGgtatatcctg ... tgtttaacagTACAGAATGGCTCCGCAGTGATTCAAGAAGAACAGTAGTAGGATTAGATTT
gattattttttgtcagtcccagtgtacttacatgacagtgatttatgtttaacagTACAGAATGGCTCCGCAGTGATTCAAGAAGAACAGTAGTAGGATTAGATTTGGATCTTGAGGCACTCAATTGGTGCATGGAAAGCAACATACCTAAAGTT
tacttac putative branch site (score: 1)
tgatttatgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttccaaatgcactgttaaccattttctcttttgatgtccattgattattttttgtcagtcccagtgtacttacatgacagtgatttatgtttaacagTACAGAATGGCTCCGCAGTGATTCAAGAAGAACAGTAGTAGGATTAGATTTGGATCTTGAGGCACTCAATTGGTGCATGGAAAGCAACATACCTAAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - aatgcac
- - - - - - - - - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagtccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgac