Skip to another splice site:
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 5'  3'   		3  
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 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcagtgattttgtttgaaaaataaggtcgcaaatgtaagtgcttaggttaggtgggcatttttttgctacatgttttaactttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA

Basic information

species Glycine max
transcript GLYMA12G09300.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g04814.1 (Oryza sativa), 3'ss of exon 2
tgtcagtgattttgtt--tgaaaaataaggtcgcaaat-gtaagtgcttaggttaggtgggcatttttttgctacatgttttaactttttaatt--cttcac-cagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
      |||| |||    |||  ||||     | | |   ||     ||   ||    | ||| | | ||     |||||| |  |  |   ||  ||| |  |||| | ||||| |||||||| |||||||| ||||||||||| |||||||| || ||  |||| |||||||||||||| || ||||  || ||||| || || 
------tgatgttgccaatgatcaatatcaatgtataccatattcatttgtattgttcgtgcaatatattttattatgtttcatttaatgtgtttgctttatgcagTATATCTTCATCAGACCTTGTTTCAAAATGGATGGGAGAGAGTGAAAAACTTGTTGCAAACCTTTTCCAAATGGCTCGAGAAAACGCTCCTTCCATTATC

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g04840.1 (Oryza sativa), 3'ss of exon 2
tgtcagtgattttgtttgaaaaataaggtcgcaaatgtaagtgct-taggttaggtgggcatttttttgctacatgtt---ttaact-ttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
|     |  |||| ||||     |      || | |   |||||  || | |  ||     | ||| || | ||||||   |||||  ||||  || |    |||  | ||||| |||||||| |||||||| ||||||||||||||||| || || ||  | ||||||||||| ||||| || |||| ||| || || || || 
ttctctttcttttctttgc----tgctactgctagtactagtgcagtatgctttgttctt-tgtttctgtttcatgttatgttaacgattttggttttcttgcagCATATCTTCATCAGACCTTGTTTCAAAATGGATGGGAGAAAGTGAGAAACTAGTTGCTAATCTTTTCCAGATGGCCCGTGAAAATGCTCCCTCCATTATC

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g06490.1 (Oryza sativa), 3'ss of exon 2
-tgtcagtgattttgtttgaaaaataaggtcgcaaatgtaagtgcttaggttaggtgggcatttttttgcta-catgttttaactttttaattctt-caccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
   |   | | ||||    |||| || ||    |  ||| |   ||| | |  | |     | |  || |||   ||   | ||   |  |  |   |  |||| | |||||||| || ||  | || |||||||||||||||||||| ||||||||  | || || ||||| ||||| || |||| |||||| || || || 
gcattgttaaatttggac-aaaactatggagtgatctgtcat--ctttgttctgttattagtgtaattactaatctgaagtgacggatggacacacactgcagTATATCTTCGTCGGATCTTCTCTCCAAGTGGATGGGAGAAAGTGAGAAGCTGGTGACGAACCTGTTCCAGATGGCCCGTGAAAATGCACCCTCCATTATC

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G126860_T01 (Zea mays), 3'ss of exon 2
-------tgtcagtgattttgtttgaaaaataaggtcgcaaatgtaagtgcttaggttaggtgggcatttttttgctacatgttttaactttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
       |  || |  ||| ||||  | | |    | |  ||||||||         ||       | |||||| |   || ||| |   | ||  ||  |  | ||| | ||||| ||||| |||||||||||||||||||| ||||| || ||  | ||| ||||||||||||||||||| || |||| ||| ||||| || || 
atctaacttgcaattttttagtttacatacttgattggtcaatgtaagataccctacta------tactttttttcatgatatttcacaatgttgctttattgc-agTATATCTTCTTCAGATCTGGTTTCAAAGTGGATGGGTGAAAGCGAGAAATTAGTCGCAAATCTTTTCCAAATGGCTCGTGAAAATGCCCCTTCCATTATC

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G088834_T01 (Zea mays), 3'ss of exon 2
tgtcagtgattttgtt--tgaaaaataaggtcgcaaatgtaagtgcttaggttaggtgggcatttttttgctacatgttttaactttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
| ||| |   || ||   || |   ||      | ||| |     | |  |||   |  ||  | | ||  ||     ||| ||  | |   | | |  |||| | ||||| ||||| |||||||||||||||||||| |||||||| ||  | ||  ||||||| ||||||||||| || |||| ||| ||||| || || 
tttcacttgattggtcaatggatgttagcaatactaatatcctaccatttgttttctatgccgtatctt--tatgatatttcacactgttgctttactgcagTATATCTTCTTCAGATCTGGTTTCAAAGTGGATGGGTGAAAGTGAGAAATTAGTTGCAAATCTGTTCCAAATGGCTCGGGAAAATGCCCCTTCCATTATC

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G27600.1 (Arabidopsis thaliana), 3'ss of exon 2
tgtcagtgattttgtttgaaaaataaggtcgca-aatgtaagtgcttaggttaggtgggcatttttttgctacatgttttaactttttaattcttcacc---agTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
  |  ||  ||||  |     | |  | |   | | |||   | ||| |   |    |  ||   ||    | |  | ||  ||||||| |||   |||   || || ||||| |||||||| || || ||||||||||| |||||||| ||||| || ||||| |||||| | ||||| || |||||||| || || || || 
--ttggttgtttttctatgtcagtttgtttttacagtgtttatacttgga--aacatgttatagcttaagaaaagttgtttcctttttacttcccaaccttcagCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCAAACCTTTTCGAGATGGCCCGTGAAAGTGCTCCCTCGATTATT

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0080g00160.t01 (Vitis vinifera), 3'ss of exon 2
-----tgtcagtgattttgtttgaaaaataagg-tcgcaaatgtaagtgcttaggttaggtgggcatttttttgctacatgttttaactttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
     |||   || || || ||     ||     ||     | || || | |  | |  |  | || |   |||   || ||   ||||  |   |||||   |||||| ||||| |||||||||||||||||||||||||| |||||||||||| | || ||||||||||| |||||||| || || ||||| ||||| ||||| 
aagtctgtttctgtttctggttatcgtatttttctcctccttttatgttcatgagcttag--gccaataagttg--gcaagtgccaactgct--gttcttttgcagTGTCTCTTCTTCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGTTAGTTTCAAATCTTTTTCAAATGGCTCGGGAGAGTGCTCCTTCCATCATC

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S76_197V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------tgtcagtgattttgtttgaaaaataaggtcgcaaatgtaagtgcttaggttaggtgggcatttttttgctaca----------tgttt-------taactttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
                                     | | |   | ||||  | ||  |  |  || |       || |   |  | |||| |  |    |||  || |          || ||       | | | ||   ||| ||  |||| |||| || |||||| |||| ||||||||||||||||| ||||| ||||| ||  ||||||| || |||||||| || |||  ||| || || ||||| 
gtaactgtcgaagcataatttggacacgatcatcttgtattaccaactttggctaaatgaagaattctccgggacgagcgag-aaatgaggttgttaaacctttagtatacttggactggtggttctgggactgattattactttcctctgcagTATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCTTGTTGCAAATCTGTTTCAAATGGCCCGTGAAGCTGCTCCATCCATCATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207829687|gb|GD802359.1|GD802359
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193679983|gb|FK620711.1|FK620711
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|208107476|gb|GD903835.1|GD903835
EST:     CGTATTTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: CGTA-TTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|207713684|gb|GD695359.1|GD695359
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|208248151|gb|GE049851.1|GE049851
EST:     CGTATTTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: CGTA-TTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|208163277|gb|GD961069.1|GD961069
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193526444|gb|FK483774.1|FK483774
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: gi|207791408|gb|GD763203.1|GD763203
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193562044|gb|FK521221.1|FK521221
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACG-TTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193564864|gb|FK520077.1|FK520077
EST:     TATTTGGTCCAAGGCCGTTTGTCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TATTTGG-CCAAGGCCG-TTG-CCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|4296956|gb|AI442549.1|AI442549
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|207815901|gb|GD788786.1|GD788786
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGT
EST: gi|193547969|gb|FK505138.1|FK505138
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCA
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCA
EST: gi|207842112|gb|GD816698.1|GD816698
EST:     CGTTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: CG-TATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193304515|gb|FK273134.1|FK273134
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|207740471|gb|GD715291.1|GD715291
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         CGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAG
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAG
EST: gi|208158109|gb|GD957834.1|GD957834
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGAATAGGGAGAAAGTGAAAAG
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGG-AT-GGGAGAAAGTGAAAAG
EST: gi|208294243|gb|GE092116.1|GE092116
EST:     CGTATTTGGCCAAGGCCGTTGCCACGAGAAGCTGATTCTACGTTTT-CAG                         TGTTTCTTCGTCAGACCT
genomic: CGTATTTGGCCAAGGCCGTTGCCAC-AGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCT
EST: gi|9987215|gb|BE661323.1|BE661323
EST:     CGTATTTGGC-AAGGCCGTTGCCACAGAAGCTGATTCTACGNTTTTTCAG                         TGGTTCTTCGTCAGACCTGGNTTTCAAAAGTGGATGGGAGAAAGTGAAAA
genomic: CGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACG-TTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGG-TTTCAAA-GTGGATGGGAGAAAGTGAAAA
EST: gi|193712163|gb|FK654870.1|FK654870
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: gi|208201547|gb|GD996106.1|GD996106
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193673533|gb|FK617758.1|FK617758
EST:     CGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: CGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193646399|gb|FK592704.1|FK592704
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|208278946|gb|GE077493.1|GE077493
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCT
EST: gi|208321492|gb|GE119545.1|GE119545
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAA
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAA
EST: gi|208270912|gb|GE067792.1|GE067792
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193309576|gb|FK277140.1|FK277140
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTCTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193597928|gb|FK552834.1|FK552834
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|207788082|gb|GD760172.1|GD760172
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACG-TTTTCGG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|208168018|gb|GD966076.1|GD966076
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAA-GTGAAA
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: gi|193400790|gb|FK366261.1|FK366261
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|193715119|gb|FK650228.1|FK650228
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTT-CAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAA-GTGAAA
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAA
EST: gi|208107948|gb|GD902026.1|GD902026
EST:     TATTTTGGCCAAGGCCGTTTGCCACAGAAGCTGATTCTACGTTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGC
genomic: TA-TTTGGCCAAGGCCG-TTGCCACAGAAGCTGATTCTACG-TTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGC
EST: gi|193532173|gb|FK491909.1|FK491909
EST:     CCACAGAAGCTGATTCTTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: CCACAGAAGCTGATTC-TACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|19346337|gb|BM891217.1|BM891217
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
EST: gi|208295762|gb|GE093075.1|GE093075
EST:     TCGTATTTGGCCAAGGCCGTTGCCACAGAAACTGATTCTACGTTTTTCAG                         TGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT
genomic: TCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttat ... tcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggttaggtgggcatttttttgctacatgttttaactttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA
                                    ctttttaattcttc  CT-rich tract
                        tacatgttttaacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtcagtgattttgtttgaaaaataaggtcgcaaatgtaagtgcttaggttaggtgggcatttttttgctacatgttttaactttttaattcttcaccagTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATA

- - - - - -ttgtttg
- - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - -aggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttt