1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttactagctactaaatttgttatttttctttccttactcgtttttttcccttcagctgaggatttcttttgtggtgaatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCAGAATG
species | Glycine max |
transcript | GLYMA12G09250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATTGCATTTGAATTCCTGTAATGGCG ATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCEST: gi|193729723|gb|FK664669.1|FK664669
genomic: GTGATTGCATTTGAATTCCTGTAATGGCGgtaagttact ... aatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCC
EST: GTGATTGCATTTGAATTCCTGTAATGGCG ATTGATAATATTTTTTAAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGEST: gi|192302430|gb|FG996684.1|FG996684
genomic: GTGATTGCATTTGAATTCCTGTAATGGCGgtaagttact ... aatgctgtagATTGATAATA-TTTTT-AAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTG
EST: GTGATTGCATTTGAATTCCTGTAATGGCG ATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCEST: gi|15200734|gb|BI424502.1|BI424502
genomic: GTGATTGCATTTGAATTCCTGTAATGGCGgtaagttact ... aatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCC
EST: GTGATTGCATTTGAATTCCTGTAATGGCG ATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCEST: gi|213601247|gb|DB956527.1|DB956527
genomic: GTGATTGCATTTGAATTCCTGTAATGGCGgtaagttact ... aatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCC
EST: GTGATTGCATTTGAATTCCTGTAATGGCG ATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCEST: gi|261497099|gb|GT185167.1|GT185167
genomic: GTGATTGCATTTGAATTCCTGTAATGGCGgtaagttact ... aatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCC
EST: GTGATTGCATTTGAATTCCTGTAATGGCG ATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCC
genomic: GTGATTGCATTTGAATTCCTGTAATGGCGgtaagttact ... aatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCC
ccttactcgtttttttcccttcagctgaggatttcttttgtggtgaatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCAGAATG
tccttac putative branch site (score: 2)
atttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttactagctactaaatttgttatttttctttccttactcgtttttttcccttcagctgaggatttcttttgtggtgaatgctgtagATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA