1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttatccagggaagctggatgggatgtttatggttgactcagttcctcttgtttatgtgtgtttggtttgctaatgtatgtttttattgtttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAG
species | Glycine max |
transcript | GLYMA12G09200.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|192332259|gb|FK023908.1|FK023908
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|298167178|gb|HO010617.1|HO010617
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCCTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|213603562|gb|DB962708.1|DB962708
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|13252385|gb|BG363288.1|BG363288
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|16347874|gb|BI973469.1|BI973469
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|298194521|gb|HO042993.1|HO042993
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACEST: gi|192316064|gb|FK008889.1|FK008889
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGAC
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|27425137|gb|CA936657.1|CA936657
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|298165521|gb|HO011570.1|HO011570
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGEST: gi|17401417|gb|BM178199.1|BM178199
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAG AGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGgtaaagtttg ... tttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGG
cctcttgtttatgtgtgtttggtttgctaatgtatgtttttattgtttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAG
tgctaat putative branch site (score: 2)
tttgcttt putative PPT
taatgtatgtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttatccagggaagctggatgggatgtttatggttgactcagttcctcttgtttatgtgtgtttggtttgctaatgtatgtttttattgtttgctttagAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - -ggatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt