1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...cttttaatgttttctatttgagtattggattttgtgtactgttgtattaatcattggggtatactattcattttcctgatttattgacatctctttgtagGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG
species | Glycine max |
transcript | GLYMA12G07590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAG GAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGEST: gi|209727434|gb|BW663720.1|BW663720
genomic: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAGgtatacgatt ... ctctttgtagGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
EST: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAG GAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGEST: gi|209696512|gb|BW666889.1|BW666889
genomic: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAGgtatacgatt ... ctctttgtagGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
EST: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAG GAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGEST: gi|209719159|gb|BW679752.1|BW679752
genomic: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAGgtatacgatt ... ctctttgtagGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
EST: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAG GAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
genomic: CGGGCAGAATTTTTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAGgtatacgatt ... ctctttgtagGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
attaatcattggggtatactattcattttcctgatttattgacatctctttgtagGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG
tattgac putative branch site (score: 2)
catctcttt CT-rich tract
tatactattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttaatgttttctatttgagtattggattttgtgtactgttgtattaatcattggggtatactattcattttcctgatttattgacatctctttgtagGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - tgtgtac
- - - - - - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttggggt