1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttagtgttcaatatataatttatgcattgttgtcatatgattgctcttttatttcttttatcaagtgctttggtaatggatactgttctcacacactgtagCTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGAATGTCAAAAAAGATAAAGGTATGGTCAAGCTAACTAAGGCTGAAAAGAG
species | Glycine max |
transcript | GLYMA12G07470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGCTCTTCCAATCAAGACATTGGATGGAAAGATCCATTACCAGACAG CTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGAEST: gi|17518697|gb|BM187739.1|BM187739
genomic: AGATGCTCTTCCAATCAAGACATTGGATGGAAAGATCCATTACCAGACAGgtatttagtg ... cacactgtagCTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGA
EST: AGATGCTCTTCCAATCAAGACATTGGATGGAAAGATCCATTACCAGACAG CTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGAEST: gi|208160626|gb|GD964690.1|GD964690
genomic: AGATGCTCTTCCAATCAAGACATTGGATGGAAAGATCCATTACCAGACAGgtatttagtg ... cacactgtagCTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGA
EST: GCTCTTCCAATCAAGACATTGGATAGGAAAAGAATACCATTACCAGACAG CTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGA
genomic: GCTCTTCCAATCAAGACATTGGAT-GGAAA-GA-T-CCATTACCAGACAGgtatttagtg ... cacactgtagCTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGA
ttttatttcttttatcaagtgctttggtaatggatactgttctcacacactgtagCTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGAATGTCAAAAAAGATAAAGGTATGGTCAAGCTAACTAAGGCTGAAAAGAG
ttctcac putative branch site (score: 2)
ttctcac CT-rich tract
tttcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttagtgttcaatatataatttatgcattgttgtcatatgattgctcttttatttcttttatcaagtgctttggtaatggatactgttctcacacactgtagCTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGAATGTCAAAAAAGATAAAGGTATGGTCAAGCTAACTAAGGCTGAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT