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...tgatcattggtgatctctagattagacttagaggatctgagcttttgataggatgctgttggttgttaggtttgatgcttatccctgttataatgtgcagGGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTCAATTTTTATCAAACTGTGGTAGCTGATGTGGCGAAGCTTTTCCATATTG
species | Glycine max |
transcript | GLYMA12G07260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATTGACAGCTGAAAGCAAAGTTGTTTTGGGCCTCCTTAACTCTTTAGTT GGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTCEST: gi|42722722|gb|CK768621.1|CK768621
genomic: TATTGACAGCTGAAAGCAAAGTTGTTTTGGGCCTCCTTAACTCTTTAGTTgtaagttttc ... taatgtgcagGGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTC
EST: TATTGACAGCTGAAAGCAAAGTTGTTTTGGGCCTCCTTAACTCTTTAGTT GGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTCEST: gi|193674711|gb|FK615591.1|FK615591
genomic: TATTGACAGCTGAAAGCAAAGTTGTTTTGGGCCTCCTTAACTCTTTAGTTgtaagttttc ... taatgtgcagGGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTC
EST: TATTGACAGCTGAAAGCAAAGTTGTTTTGGGCCTCCTTAACTCTCTAGTT GGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGACGTC
genomic: TATTGACAGCTGAAAGCAAAGTTGTTTTGGGCCTCCTTAACTCTTTAGTTgtaagttttc ... taatgtgcagGGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTC
tgataggatgctgttggttgttaggtttgatgcttatccctgttataatgtgcagGGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTCAATTTTTATCAAACTGTGGTAGCTGATGTGGCGAAGCTTTTCCATATTG
tgttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcattggtgatctctagattagacttagaggatctgagcttttgataggatgctgttggttgttaggtttgatgcttatccctgttataatgtgcagGGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTCAATTTTTATCAAACTGTGGTAGCTGATGTGGCGAAGCTTTTCCATATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -attggtg
- - - - - - - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtt