1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcttctccagcttctttcttttctcctttattttttaaaaaaatactaataataattgcactttgcaccttttgagttttgataattcatcttgaatgttcaattttaactgttagttttttcattttgttttgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACATGGTGAAATCATTGAAG
species | Glycine max |
transcript | GLYMA12G07020.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|21889425|gb|BQ742638.1|BQ742638
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|192296082|gb|FG989448.1|FG989448
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|298173279|gb|HO016615.1|HO016615
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|22539767|gb|BU089610.1|BU089610
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|298185585|gb|HO030798.1|HO030798
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|298163570|gb|HO012303.1|HO012303
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|192307333|gb|FK000717.1|FK000717
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACEST: gi|192310264|gb|FK000716.1|FK000716
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
EST: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAG GGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
genomic: TAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGgtcttctcca ... tgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAAC
catcttgaatgttcaattttaactgttagttttttcattttgttttgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACATGGTGAAATCATTGAAG
ttttaac putative branch site (score: 2)
ttttttcattttgttt putative PPT
aattttaactgttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttctccagcttctttcttttctcctttattttttaaaaaaatactaataataattgcactttgcaccttttgagttttgataattcatcttgaatgttcaattttaactgttagttttttcattttgttttgcaatacagGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACATGGTGAAATCATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG