Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattatgttgtttatttaattggttcatcgatatatatatatatagatatatgtcattttgattgtgttgatgatggattttgggattgaatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAGTGGGGACAGAAGGTTGGGTACGTCAGAGATATTGACGGCAACGTTGTGA

Basic information

species Glycine max
transcript GLYMA12G06970.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06970.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g04420.t01 (Vitis vinifera), 3'ss of exon 2
----gtaatattatgttgtttatttaa-ttggttcatcgatatatata-tatatagatatatgtcattttgattgtgttgatgatggattttgggattgaatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAGTGGGGACAGAAGGTTGGGTACGTCAGAGATATTGACGGCAACGTTGTGA
    ||||  |||  |   |  | ||| || |  | | ||| | |  | |||   |  || ||| | | | | || |||| ||||      |||     |  || ||||   |||||||||||||||||  || | ||||||||||| |||   || |||||||| ||||||||||| |||||  | || || || ||||  || ||||
atacgtaac-ttagataaatagtgtaaatttgccctttgatgtttggaatatgatgtgatttgtgaatgtaactgagttgttgat------tgga--caatgggttcagAGGGCGGTGGAGAATGGAGCAATGTCAGTGAGCGAGCCAGAGGAAAAAGAGTGGGGGCAGAAGGTTGGATACGTTCGCGACATAGATGGCATTGTGGTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406176|gb|EV275991.1|EV275991
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|11689141|gb|BF596817.1|BF596817
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|10254321|gb|BE822087.1|BE822087
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTNNCGGTGAGCGAGCCNGNGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|298169522|gb|HO020882.1|HO020882
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|298174865|gb|HO014782.1|HO014782
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTGTGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|163918333|gb|EH039927.1|EH039927
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGGCGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|298164154|gb|HO013799.1|HO013799
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTGGGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|298198347|gb|HO039886.1|HO039886
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTG
EST: gi|298164038|gb|HO013683.1|HO013683
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CACGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
EST: gi|6455464|gb|AW186147.1|AW186147
EST:     CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAG                         CATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG
genomic: CACCCATGGAGGTTTGTTTTGTTTACTCTGACGTTGATGCTGCTTACAAGgtaatattat ... aatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatatatgtcattttgattgtgttgatgatggattttgggattgaatggatcagCATGCGGTGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTGAAGGAGTGGGGACAGAAGGTTGGGTACGTCAGAGATATTGACGGCAACGTTGTGA
                     tgttgat  putative branch site (score: 4)
           attttgatt  TA-rich tract