1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaaaatgttctaagttgttattgctttactttggttggtgttggaattttactgacatgtctctgctggtttgttcgtcaattggttggatttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG
species | Glycine max |
transcript | GLYMA12G06960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|27425977|gb|CA937497.1|CA937497
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|209702411|gb|BW656387.1|BW656387
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|17022209|gb|BM093243.1|BM093243
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|15337487|gb|BI498143.1|BI498143
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|27426740|gb|CA938260.1|CA938260
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|151400067|gb|EV269881.1|EV269881
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|13252164|gb|BG363067.1|BG363067
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|33389826|gb|CA853033.1|CA853033
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|298173257|gb|HO020241.1|HO020241
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|151397271|gb|EV267144.1|EV267144
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|33387309|gb|CA850516.1|CA850516
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|14259958|gb|BG882866.1|BG882866
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|19268884|gb|BM885140.1|BM885140
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|208062016|gb|GD856804.1|GD856804
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTEST: gi|20498658|gb|BQ273588.1|BQ273588
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTT
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|298182923|gb|HO028136.1|HO028136
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|20498754|gb|BQ273684.1|BQ273684
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|209704114|gb|BW673714.1|BW673714
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAAEST: gi|209702412|gb|BW656388.1|BW656388
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
EST: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTA CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
genomic: AACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagcccct ... tttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAA
attttactgacatgtctctgctggtttgttcgtcaattggttggatttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG
tactgac putative branch site (score: 1)
tttctcat putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaatgttctaagttgttattgctttactttggttggtgttggaattttactgacatgtctctgctggtttgttcgtcaattggttggatttctcatagCGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG
- - - - - - - - - - -tgcttta
- - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - -tactgac