1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagatatctggatggttttattttcaatatttttgtttcctgcagtgattgaccagtacttttcaatttctattgatttactgagtctactgtattgcaatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATG
species | Glycine max |
transcript | GLYMA12G06820.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA GCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTEST: gi|11275182|gb|BF325505.1|BF325505
genomic: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatc ... caatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTT
EST: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA GCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTEST: gi|209705758|gb|BW661426.1|BW661426
genomic: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatc ... caatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTT
EST: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA GCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTEST: gi|209699901|gb|BW652541.1|BW652541
genomic: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatc ... caatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTT
EST: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA GCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTEST: gi|120533483|gb|EH261616.1|EH261616
genomic: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatc ... caatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTT
EST: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA GCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTEST: gi|6916053|gb|AW397583.1|AW397583
genomic: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatc ... caatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTT
EST: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA GCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTT
genomic: GTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatc ... caatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTT
ccagtacttttcaatttctattgatttactgagtctactgtattgcaatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATG
tattgat putative branch site (score: 3)
ttttcaatttctattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatctggatggttttattttcaatatttttgtttcctgcagtgattgaccagtacttttcaatttctattgatttactgagtctactgtattgcaatgtttagGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG