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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatagtttcccggttatctttcatccttcttgtgttttgtcattgttttgatgttttcaacttatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGT

Basic information

species Glycine max
transcript GLYMA12G03660.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03660.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g02380.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------------------------------------------------------------------gtaagtatagtttcccggttatctttcatccttcttgtgttttgtcattgttttgatgttttcaacttatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGT
                                                                                                                     ||    || |||  |     |     | || ||   |  | ||   ||||   |||| || | || |||||| |||||||| || ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||||||||| ||||| |||| ||||||||||||||||||
gtaaagttccagacctgtaggaattgtttgttcacatttttttgaggtactttgcttgctctcagggtaaaaaatacattgttcttaaaggcaaacaaaaactactttaaagatgctgtctcaatggttgtcttaccactacacctctttgagggttcttaatattgaactgattttgttaatttatggaacagGCCAGGAGGATTACAATAGGTTGAGACCTTTGAGCTACCGTGGTGCAGATGTCTTTCTGCTTGCTTTCTCCCTCATTAGCAAGGCTAGCTATGAAAATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014286|gb|CX701028.1|CX701028
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|58020948|gb|CX707690.1|CX707690
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|151401174|gb|EV270988.1|EV270988
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGCTTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|308222701|gb|HO760611.1|HO760611
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|58021197|gb|CX707939.1|CX707939
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|298170161|gb|HO018785.1|HO018785
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|192329144|gb|FK021131.1|FK021131
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
EST: gi|298172850|gb|HO019834.1|HO019834
EST:     TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG                         GCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG
genomic: TGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGgtaagtatag ... tatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcatccttcttgtgttttgtcattgttttgatgttttcaacttatgggacagGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGT
                            ttttgat  putative branch site (score: 4)
                        attgtttt  TA-rich tract