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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagccaccaatcccactaagtgggaaaaaaaaaaggtttttcttgtttatttttacgcatttctttccttttccgatgagctactactttgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGTTCAGGAGGACAACAAGTTCAAAATTTTGAAGATCATCAAAGGAATGG

Basic information

species Glycine max
transcript GLYMA12G02920.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398243|gb|EV268121.1|EV268121
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|208291345|gb|GE094567.1|GE094567
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|7693079|gb|AW761177.1|AW761177
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAT                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|208296315|gb|GE089611.1|GE089611
EST:     AGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: AGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|298164120|gb|HO013765.1|HO013765
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|24135503|gb|BU926013.1|BU926013
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|213611749|gb|DB958871.1|DB958871
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|208295162|gb|GE091285.1|GE091285
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|298177471|gb|HO023604.1|HO023604
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGNNNNNNNTTGTTGAGAGTTTTCTCGATGAAGAGGGAG
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGG-AAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAG
EST: gi|193414153|gb|FK377853.1|FK377853
EST:     ACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: ACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|298168341|gb|HO014516.1|HO014516
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|193436738|gb|FK400883.1|FK400883
EST:     ACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAA-TGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: ACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|193429874|gb|FK395536.1|FK395536
EST:     ACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: ACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|298190152|gb|HO032273.1|HO032273
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
EST: gi|298185748|gb|HO028059.1|HO028059
EST:     GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG                         GGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT
genomic: GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGgttacttact ... tgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatttttacgcatttctttccttttccgatgagctactactttgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGTTCAGGAGGACAACAAGTTCAAAATTTTGAAGATCATCAAAGGAATGG
                                       ctacttt  CT-rich tract
              atttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagccaccaatcccactaagtgggaaaaaaaaaaggtttttcttgtttatttttacgcatttctttccttttccgatgagctactactttgtcatttagGGACCCATCTGAGGAAAAAATTGTTGAGAATTTTCTCGATGAAGAGGGAGTTCAGGAGGACAACAAGTTCAAAATTTTGAAGATCATCAAAGGAATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA