1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatatctactactgtactattcttagtggccctttcatgcgtagccttttctttttcttgttggatcaaaatcatgattgctgggtgtatatggttgtagTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG
species | Glycine max |
transcript | GLYMA12G01080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCT TCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATEST: gi|192324546|gb|FK018702.1|FK018702
genomic: CATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTgtaagtacca ... atggttgtagTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACAT
EST: CATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCT TCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACAT
genomic: CATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTgtaagtacca ... atggttgtagTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACAT
cttttctttttcttgttggatcaaaatcatgattgctgggtgtatatggttgtagTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatctactactgtactattcttagtggccctttcatgcgtagccttttctttttcttgttggatcaaaatcatgattgctgggtgtatatggttgtagTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG