1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgatcaagatctgagtatgcctttacatcatgcgtgttctttgtttttcctctcataaaagcaaccagtaagatctgagaatgtcctgtttcatggtcatgctgatttttggagttgcttcatacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGCTGGCTAGCAAC
species | Glycine max |
transcript | GLYMA12G00830.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGEST: gi|192306687|gb|FG998085.1|FG998085
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGEST: gi|298186631|gb|HO037264.1|HO037264
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
EST: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG TGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
genomic: GAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGgtatgatcaa ... tacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTG
agaatgtcctgtttcatggtcatgctgatttttggagttgcttcatacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGCTGGCTAGCAAC
tgctgat putative branch site (score: 3)
tgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcaagatctgagtatgcctttacatcatgcgtgttctttgtttttcctctcataaaagcaaccagtaagatctgagaatgtcctgtttcatggtcatgctgatttttggagttgcttcatacttaacagTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGCTGGCTAGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA