1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattacatacttctcttttggttgttttctgaatttcacaatgataaggtggttgtttatgctatttcttttttcatatttgttaatttcacagCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCAC
species | Glycine max |
transcript | GLYMA12G00790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTG CTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAEST: gi|27445792|gb|CA952915.1|CA952915
genomic: GGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGgtattacata ... aatttcacagCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCA
EST: GGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTG CTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAEST: gi|18733283|gb|BM527521.1|BM527521
genomic: GGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGgtattacata ... aatttcacagCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCA
EST: GGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTG CTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCA
genomic: GGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGgtattacata ... aatttcacagCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCA
aatgataaggtggttgtttatgctatttcttttttcatatttgttaatttcacagCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCAC
tgttaat putative branch site (score: 3)
tttatgctatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattacatacttctcttttggttgttttctgaatttcacaatgataaggtggttgtttatgctatttcttttttcatatttgttaatttcacagCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA