1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccacactcaccatcgtgttactttttttgtaattcaatgttgtggatgatgtggtgttgaacctaaactcaggtgcattttatttggtttttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCC
species | Glycine max |
transcript | GLYMA11G36990.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|193390296|gb|FK354928.1|FK354928
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|9899202|gb|BE608100.1|BE608100
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|298190731|gb|HO032852.1|HO032852
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|193409709|gb|FK375015.1|FK375015
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|192328242|gb|FK020461.1|FK020461
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|254331208|gb|GR845787.1|GR845787
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|13312501|gb|BG406152.1|BG406152
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTEST: gi|192328139|gb|FK022848.1|FK022848
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
EST: GTTGATAACAGAAATTCCTCAACCACCAAGCGTGCTAGGACTGATG GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcacg ... ttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATT
atgatgtggtgttgaacctaaactcaggtgcattttatttggtttttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCC
acctaaa putative branch site (score: 3)
tttttgttt putative PPT
attttatttggttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacactcaccatcgtgttactttttttgtaattcaatgttgtggatgatgtggtgttgaacctaaactcaggtgcattttatttggtttttgtttgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCC
ccacact
- - - -caccatc
- - - - - - - - - - - - - - - - - - - gttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggtgc