1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaagaaagatatcaactttattctagttactttgtttctttcctccattttgaaattacctaatacagtctacttgttttttttttaatcatatttcagTTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCTTTGCACAAAGTTGTTGAGCCTGCCGATATCATACAGAAGACTGGATTA
species | Glycine max |
transcript | GLYMA11G36670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCACCTGCACTCGT TTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCEST: gi|213618160|gb|DB965317.1|DB965317
genomic: CGCACCTGCACTCGTgtgtgtaatc ... catatttcagTTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATC
EST: CATGGAGACCCCTCGGCAGACCGACGATTTCTCATCGCACCTGCACTCGT TTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCEST: gi|308099231|gb|HO761409.1|HO761409
genomic: CATGGAGACCCCTCGGCAGACCGACGATTTCTCATCGCACCTGCACTCGTgtgtgtaatc ... catatttcagTTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATC
EST: CATGGAGACCCCTCGGCAGACCGACGATTTCTCATCGCACCTGCACTCGT TTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCEST: gi|213604534|gb|DB970654.1|DB970654
genomic: CATGGAGACCCCTCGGCAGACCGACGATTTCTCATCGCACCTGCACTCGTgtgtgtaatc ... catatttcagTTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATC
EST: CATGGAGACCCCTCGGCAGACCGACGATTTCTCATCGCACCTGCACTCGT TTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATC
genomic: CATGGAGACCCCTCGGCAGACCGACGATTTCTCATCGCACCTGCACTCGTgtgtgtaatc ... catatttcagTTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATC
ccattttgaaattacctaatacagtctacttgttttttttttaatcatatttcagTTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCTTTGCACAAAGTTGTTGAGCCTGCCGATATCATACAGAAGACTGGATTA
ttttaat putative branch site (score: 3)
ttttttttttaatc CT-rich tract
tctacttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagaaagatatcaactttattctagttactttgtttctttcctccattttgaaattacctaatacagtctacttgttttttttttaatcatatttcagTTCAGGTCGCATATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCTTTGCACAAAGTTGTTGAGCCTGCCGATATCATACAGAAGACTGGATTA
- aagaaaga
- - - - - - - - - - - - - - - - - - - - ttcctcc