1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttcattggtggaaagcaatgtttgactttatagtgtgctagattattcaaccaattgcaatatggaacatgatgttcaactaagcaatttatattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAGGCAAATGACTTGGCGATGCTGATGGCCCGTTTATACACTGGTAATATGGGTATGATTTCCTTAAGGAATG
species | Glycine max |
transcript | GLYMA11G36000.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAGCTGATTTTGCAGAGGCCTTGGCATCCAAAGTGCCTGGAAACCTTAAG GTTGTTTATTTTGTAAATTCTGGTTCAGAGGCAAATGACTTGGCGATGCTGEST: gi|151410465|gb|EV280280.1|EV280280
genomic: TAGCTGATTTTGCAGAGGCCTTGGCATCCAAAGTGCCTGGAAACCTTAAGgtcaaattca ... tatattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAGGCAAATGACTTGGCGATGCTG
EST: TAGCTGATTTTGCAGAGGCCTTGGCATCCAAAGTGCCTGGAAACCTTAAG GTTGTTTATTTTGTAAATTCTGGTTCAGAGGCAAATGACTTGGCGATGCTG
genomic: TAGCTGATTTTGCAGAGGCCTTGGCATCCAAAGTGCCTGGAAACCTTAAGgtcaaattca ... tatattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAGGCAAATGACTTGGCGATGCTG
attcaaccaattgcaatatggaacatgatgttcaactaagcaatttatattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAGGCAAATGACTTGGCGATGCTGATGGCCCGTTTATACACTGGTAATATGGGTATGATTTCCTTAAGGAATG
taagcaatttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcattggtggaaagcaatgtttgactttatagtgtgctagattattcaaccaattgcaatatggaacatgatgttcaactaagcaatttatattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAGGCAAATGACTTGGCGATGCTGATGGCCCGTTTATACACTGGTAATATGGGTATGATTTCCTTAAGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA