1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgatattttgagactgttaaatcaaattactattgttcatattgttggtttgatagtatttagtatcatgctgatcatgagaatgtattttgtttggcagGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCAAACCTTGTTCACATAAAGTCCAT
species | Glycine max |
transcript | GLYMA11G35570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTGTAATTGGTTTGGAGTTGAGTGCTCTGATGGAAGAGTAGTGGTCTT GAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCGAAEST: gi|9987036|gb|BE661144.1|BE661144
genomic: CCGTGTAATTGGTTTGGAGTTGAGTGCTCTGATGGAAGAGTAGTGGTCTTgtaagttctg ... tgtttggcagGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCAAA
EST: CCGTGTAATTGGTTTGGAGTTGAGTGCTCTGATGGAAGAGTAGTGGTCTT GAATTTGAAAGACCTTTGTCTCGAANGAAATCTGGTACCTGAGCTTGCAAA
genomic: CCGTGTAATTGGTTTGGAGTTGAGTGCTCTGATGGAAGAGTAGTGGTCTTgtaagttctg ... tgtttggcagGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCAAA
tggtttgatagtatttagtatcatgctgatcatgagaatgtattttgtttggcagGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCAAACCTTGTTCACATAAAGTCCAT
tgctgat putative branch site (score: 3)
ttttgttt putative PPT
atagtatttagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatattttgagactgttaaatcaaattactattgttcatattgttggtttgatagtatttagtatcatgctgatcatgagaatgtattttgtttggcagGAATTTGAAAGACCTTTGTCTCGAAGGAAATCTGGTACCTGAGCTTGCAAACCTTGTTCACATAAAGTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - -gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgag