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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttatgctgtttttgtatactttggttttggtttcacctttttcttaggagaatgtatgcaggggtgcaccttataggaatctgatgttggactattgcaattgtagATGATTCCTGATATTACATTTGGCAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGCGTTGCAAGTTTTGGTGCGTACTTACTGTCACGGAATGTTG

Basic information

species Glycine max
transcript GLYMA11G34430.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G34430.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 3'ss of exon 2
gttgttatgctgtttttgtatactttggttttggtttcacctttttcttaggagaatgtatgcaggggtgcaccttataggaatctgatgttggactattgcaattgtagATGATTCCTGATATTACATTTGGCAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGCGTTGCAAGTTTTGGTGCGTACTTACTGTCACGGAATGTTG
                            |  || ||  || ||| ||| | || ||| |   || |       ||   || |     |   ||      ||    |  ||||| | || |||||| ||||||||   || |  || || |  || |||||||||||||| || |||||||||||||| |||||||| |||||  ||||  
-------------------------gtatgctgattgtacttttatctgatgaaaattttatcatgttgctgactctcagtagcaccac-ctgtctctctgttcatccagATGGTACCAGATATTGCATTTGGCTCTCACACTAGAGTTGCCCTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATACTTACTTTCACGTGATGTGT

upper sequence: GLYMA11G34430.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G092120_T02 (Zea mays), 3'ss of exon 2
gttgttatgctgtttttgtatactttggttttggtttcacctttttcttaggagaat---gtatgcaggggtgcaccttataggaatctgatgttggactattgcaattgtagATGATTCCTGATATTACATTTGGCAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGCGTTGCAAGTTTTGGTGCGTACTTACTGTCACGGAATGTTG
                             || | | |||  | ||  | |  |       | ||  |    |    || |   ||      ||||   |   ||    |  ||||| | ||  || || |||||||    ||||  || || ||  | |||||||||||||| || |||||||||||||| || ||||| |||||  ||||  
----------------------------gttcgatgtcaaatattcttcaaaactgcttggaatttaatccttactctgactagagcaacctgttc--cctctgttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATATTTACTTTCACGTGATGTCC

upper sequence: GLYMA11G34430.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 2
gttgttatgctgtttttgtatactttggttttggtttcacctttttcttaggagaatgtatgcaggggtgcaccttataggaatctgatgttggactattgcaattgtagATGATTCCTGATATTACATTTGGCAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGCGTTGCAAGTTTTGGTGCGTACTTACTGTCACGGAATGTTG
     |      |||||  |     | ||| | ||||  |   |        |   | |||| |    | || || ||    | ||     |||| | |||    || ||||| || |||||||||| |||||||||||||| ||||| | | | |||||||| ||||| || || ||||||||||| ||  || |||| ||  ||||  
----gtggctcatttttccaagtagtagttcttgtttttcgcgtc------aactgtttatgtatcttttcatctgatgttgagct----ctggagt-ttgtgtctgcagATGGTTTCTGATATTACGTTTGGCAAGCATATTAGGGTTGCTATGGATGTTGGTTGTGGTGTGGCGAGTTTTGGTGCTTATCTATTGTCTCGTGATGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatgcaggggtgcaccttataggaatctgatgttggactattgcaattgtagATGATTCCTGATATTACATTTGGCAAGCATATAAGGGTGGTTCTTGATGTTGGCTGTGGCGTTGCAAGTTTTGGTGCGTACTTACTGTCACGGAATGTTG
                           atctgat  putative branch site (score: 4)
                                               aattgta  TA-rich tract