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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattttttgaaccaattatctgcatttgcatgactgtttggcactgaccgagctgacatattcaattctttattgtttgtgttttctttttcgatgaacaatagcatcatcccttgtttagtttatttaaaataacatcaactaaaattttatactgattccaatattttattcagCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAG

Basic information

species Glycine max
transcript GLYMA11G34130.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399017|gb|EV268888.1|EV268888
EST:     CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTG                         CGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTG
genomic: CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTGgtatgcattt ... ttttattcagCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTG
EST: gi|192299785|gb|FG987801.1|FG987801
EST:     CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTG                         CGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTG
genomic: CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTGgtatgcattt ... ttttattcagCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTG
EST: gi|151409236|gb|EV279044.1|EV279044
EST:     CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTG                         CGCGTTCATGCAACACGTCCTAGTAATTCCACTTCACTCACTTTTCCCGTG
genomic: CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTGgtatgcattt ... ttttattcagCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTG
EST: gi|9899003|gb|BE607971.1|BE607971
EST:     CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTG                         CGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTG
genomic: CAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATTGgtatgcattt ... ttttattcagCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttaaaataacatcaactaaaattttatactgattccaatattttattcagCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAG
                               tactgat  putative branch site (score: 2)
                                             ttttattc  putative PPT
     ttaaaataacatcaac  TA-rich tract