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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcggcaattggcaataccctttaatgtcattgtcagttgcatgcagcttgctaactaattaattaccttgacattgtggctgtttgctattattctcagGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAG

Basic information

species Glycine max
transcript GLYMA11G33970.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33970.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G069758_T02 (Zea mays), 3'ss of exon 3
ctcggcaattggcaataccctttaatgtca---ttgtcagttgcatgcagcttgctaactaattaattac-cttgacattgtggctgtttgctattattctcagGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAG
 | | |   |   | |    || |  |  |   |  |        | ||  ||  ||  | ||    | | |||  |||| |  ||| |||||   ||||  ||||||||||||| || ||||| || ||||| || |||||  | || || | ||||||||||||||| || ||||| |||||||| ||||||||||
atagtctgcttcgattttgtttcagagcaagaatcattgagcattttcactttcttatttgatagcctgctcttctcattct--ctgattgctccaattc--agGGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAG

upper sequence: GLYMA11G33970.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G37850.3 (Arabidopsis thaliana), 3'ss of exon 2
--ctcggcaattggcaataccctttaatgtcattgtcagt-tgcatgcagcttgctaactaattaattaccttgacattgtggctgtttgctattattctcagGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAG
   ||      ||        ||  ||  |  || |   | ||  ||    |   | || |   || |    || |||| |   ||| |  || | |||| |||| ||||||||||| ||||| |||||||| ||||| |||||  |||| ||||||||||||||||| || ||||| || || |||||||||||||
ctgtctctctatgcttgagttctgcaacttttttttttttgtgtgtgtgtgtgtgttaccag--aaatgtgatgccattttatatgtctattact-ttcttagGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgctaactaattaattaccttgacattgtggctgtttgctattattctcagGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAG
                                             ttattctc  CT-rich tract
       taactaattaatta  TA-rich tract