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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactttttgagtatgcatgtggacagaatgttgtcactgaagtgggtgattgtgatttgtaaggagttgatggaagttgtcatgccatttgcctttgtagGAGGATTTGCCCTCAAAATCTCAACTGCAAGGTAGTCAGCTTAGGAACCGGGTTGTTTTTGGACTTGGCATTGGGATTAGTGTAGGAGGCATTGTTTTGA

Basic information

species Glycine max
transcript GLYMA11G30030.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590174|gb|DB963793.1|DB963793
EST:     AACCGGAACTTCCTCAAACCAGCACCCCCACGGTCATTCCCGAAGATGAA                         GAGGATTTGCCCTCAAAATCTCAACTGCAAGGTAGTCAGCTTAGGAACCGG
genomic: AACCGGAACTTCCTCAAACCAGCACCCCCACGGTCATTCCCGAAGATGAAgtattcaatt ... gcctttgtagGAGGATTTGCCCTCAAAATCTCAACTGCAAGGTAGTCAGCTTAGGAACCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgattgtgatttgtaaggagttgatggaagttgtcatgccatttgcctttgtagGAGGATTTGCCCTCAAAATCTCAACTGCAAGGTAGTCAGCTTAGGAACCGGGTTGTTTTTGGACTTGGCATTGGGATTAGTGTAGGAGGCATTGTTTTGA
                   agttgat  putative branch site (score: 5)
                                          tttgccttt  putative PPT
         atttgtaa  TA-rich tract