Sequence
atgc intronic sequence ATGC exonic sequencegttggatttcttatctgaatggggtggaattctttgctgcataatgccatttttttactgattattctgttagtaattgttttacaattttaattttgatctgttgtcattgggataattttcctgcagAGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAG
Basic information
species | Glycine max |
transcript | GLYMA11G26740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G26740.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0021g02140.t01 (Vitis vinifera), 3'ss of exon 14
gttggatttcttatctgaatggggtggaattctttgctgcataatgccatttttttactgattattctg--ttagtaattgttttacaattttaattttgatctgttgtcattgggataattttcctgcagAGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAG
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----------------------------------------gtaagtttcccgttttattatttgaacagaatttgttattttagcacaaatgtgaaatagctctaagattgttaatctggtttcttgtcagACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAG
upper sequence: GLYMA11G26740.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ11831 (Selaginella moellendorffii), 3'ss of exon 14
gttggatttcttatctgaatggggtggaattctttgctgcataatgccatttttttactgattattctgttagtaattgttttacaattttaattttgatctgttgtcattgggataattttcctgcagAGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAG
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------------------------------------------------------------------------gtaa--gatttttagtttt--cttacatttat-gtctgtagttttctttttaaacagACTATCGGGCAAGCATATGAAGACATGCAAACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAG
upper sequence: GLYMA11G26740.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ22678 (Selaginella moellendorffii), 3'ss of exon 13
gttggatttcttatctgaatggggtggaattctttgctgcataatgccatttttttactgattattctgttagtaattgttttacaattttaattttgatctgttgtcattgggataattttcctgcagAGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAG
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------------------------------------------------------------------------gtaa--gatttttagtttt--ctttcatttat-gtctgtaattttctttttaaacagACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattgttttacaattttaattttgatctgttgtcattgggataattttcctgcagAGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAG
ttttcctgc CT-rich tract
ttttacaattttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggatttcttatctgaatggggtggaattctttgctgcataatgccatttttttactgattattctgttagtaattgttttacaattttaattttgatctgttgtcattgggataattttcctgcagAGTATTGGACAGGCATATGACGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG