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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaagaatgttttattacttagcacatattttctcaacagtaccttttgtttgttaacgataaaattaccccgccctaccctccccaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA

Basic information

species Glycine max
transcript GLYMA11G19660.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 2
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtaagaatgttttattacttagcacatattttctcaacagtaccttttgtttgttaacgataaaattaccccgccctaccctccccaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA
|||||| |||||||         |||   |  ||||   || || | ||  |    || ||    | ||    |  |   |                     ||||  |||| ||||| |||||| |||| ||| ||||||| ||||||| ||||||  | || |||||||||||||  || || || ||||||||||| ||||
gtttgtgagaatgt------gggtagattacgttttgg-aatagaatctactcaccgtgaatttgataagaggctagttttgt-------------------agGTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGTCTCATCGCCTGGGCTAATGATGTTGGTGTTAAAGTTTATGATACAGCCA

upper sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0024g01120.t01 (Vitis vinifera), 3'ss of exon 1
gtttgtaagaatgttttattacttagcacatattttctcaacagtaccttttgtttgttaacgataaaattaccccgccctaccctccccaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA-------------------
                                            |   |||  ||| ||||  ||| ||  |    ||            | |         ||||| | ||||||||||||||| | |||||||  ||||| |||||| ||||||   |||||||||||||||||||||| || || |||||||||||||| |                   
----------------------------------------gtcatttatttatttttttaataatacaaaaagatggctaggttaaaaggatc---------aggttctacactctggtgaagGTCCTATACATGTAGTGAAGTGGAGAACAAGTCCCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTAATGATCAGCGTATAACATT

upper sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 2
gtttgtaagaatgttttattacttagcacatattttctcaacagtaccttttgtttgttaacgataaaattaccccgccctaccctccccaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA
||||||   |    ||  | || | |    |  ||   | | |      ||  |||  |        |||| |       || |||                ||||| | ||||||||||||||| | |||||||| ||||| |||||| |||||||  |||||||||||||||||||||| || || |||||||||||||| |
gtttgtgctagctcttgctaacgttgt---tgcttgtgccaaaacctggttactttcctggttcctgaattgcagaagtttatcctttttct----------agGTTCTACACTCTGGTGAAGGTCCTATACATGCAGTGAAGTGGAGAACAAGTCTCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttgttaacgataaaattaccccgccctaccctccccaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA
      tgttaac  putative branch site (score: 2)
                    ttaccccgccctaccc  putative PPT
        ttaacgataaaatta  TA-rich tract