1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aattttttctaaagaagctggatggaatgtttatgattgactcagttcatcttgtttatgtgtgtttggttgctaatggactttttgttgtatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGATGATTCACATAAAAAG
species | Glycine max |
transcript | GLYMA11G19280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAG AGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGEST: gi|17022993|gb|BM094027.1|BM094027
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGgtagtgtttg ... tatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAG AGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGEST: gi|298194859|gb|HO043331.1|HO043331
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGgtagtgtttg ... tatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAG AGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGEST: gi|151404984|gb|EV274798.1|EV274798
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGgtagtgtttg ... tatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAG AGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGEST: gi|151407857|gb|EV277672.1|EV277672
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGgtagtgtttg ... tatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAG AGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGEST: gi|18040538|gb|BM308832.1|BM308832
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGgtagtgtttg ... tatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAG AGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGEST: gi|298188244|gb|HO034937.1|HO034937
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGgtagtgtttg ... tatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGG
EST: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAG AGGACATATTGGAGGCCTTTAA
genomic: TGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAAAGgtagtgtttg ... tatgctttagAGGACATATTGGAGGCCTTTAA
ttcatcttgtttatgtgtgtttggttgctaatggactttttgttgtatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGATGATTCACATAAAAAG
tgctaat putative branch site (score: 2)
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttttctaaagaagctggatggaatgtttatgattgactcagttcatcttgtttatgtgtgtttggttgctaatggactttttgttgtatgctttagAGGACATATTGGAGGCCTTTAATAGGTGGAAAGGTAGACATTCTCTACCGGATGATTCACATAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc