1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacaacaattgcatgatgacaccacacctgtataattccattcttgatttgcaattagttttctggtaaaggggtatttctacttgttcaatggctgcagGTTGTGGAGATCACTAAAGGAAGCAAGGTTATGTATGAACTTGACCAAAAGATTGGATTGATTAAG
species | Glycine max |
transcript | GLYMA11G18100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gatttgcaattagttttctggtaaaggggtatttctacttgttcaatggctgcagGTTGTGGAGATCACTAAAGGAAGCAAGGTTATGTATGAACTTGACCAAAAGATTGGATTGATTAAG
tcttgat putative branch site (score: 4)
aattagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaacaattgcatgatgacaccacacctgtataattccattcttgatttgcaattagttttctggtaaaggggtatttctacttgttcaatggctgcagGTTGTGGAGATCACTAAAGGAAGCAAGGTTATGTATGAACTTGACCAAAAGATTGGATTGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - gcatgat
- - - - - - - - - - -ccacacc
- - - - - - - - - - - - - - - - - - -ccattct
- - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgg