1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tcttcttttgcttttattctagtattggattttgtgtactgttgtattaatcattggggtatgctatttattttcctgatttattgacatctctttgtagGAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG
species | Glycine max |
transcript | GLYMA11G15880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGCCGAATTATTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAG GAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGEST: gi|213591624|gb|DB968148.1|DB968148
genomic: CGGGCCGAATTATTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAGgtatccttga ... ctctttgtagGAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
EST: CGGGCCGAATTATTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAG GAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
genomic: CGGGCCGAATTATTGGGTTTGACGGCATGGATTTGGTACCGAGCGTCAAGgtatccttga ... ctctttgtagGAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAG
attaatcattggggtatgctatttattttcctgatttattgacatctctttgtagGAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG
tattgac putative branch site (score: 2)
catctcttt CT-rich tract
tatttattttcctgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcttttgcttttattctagtattggattttgtgtactgttgtattaatcattggggtatgctatttattttcctgatttattgacatctctttgtagGAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - cttttgc
- - - - - - - - - - - - - - - - tgtgtac
- - - - - - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtatg