1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttactttgatgtaaactgaatttcctctctagcaaatagctgcttaaacaatgaatgccataattcttaaaatctattttctttatctatggttttacagTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAGAAAATGGCATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTC
species | Glycine max |
transcript | GLYMA11G15580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCAACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAG TCACTGATGTTTCCAATGGTCTTCAAGCGTGGAAACTCCTGGAAAATCCAGEST: gi|192321789|gb|FK013195.1|FK013195
genomic: TTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGgtattaatgt ... ggttttacagTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAG
EST: TTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAG TCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAG
genomic: TTCGACACGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTATGAAGgtattaatgt ... ggttttacagTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAG
aaacaatgaatgccataattcttaaaatctattttctttatctatggttttacagTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAGAAAATGGCATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTC
ataattcttaaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactttgatgtaaactgaatttcctctctagcaaatagctgcttaaacaatgaatgccataattcttaaaatctattttctttatctatggttttacagTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAGAAAATGGCATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTC
- - - tgatgta
- - - - - - - - - - - tcctctc
- - - - - - - - - - - - - - - - - - tagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - gaatgcc