Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactattttaaatcataagatgttgattgccactttcagacttttttctttttagcatgcctatcttaatttttaatcctagcagagttttccttgcagTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCTTTTGCTTCATCATTTTCTGGTCAGTCTGGTGCAGCCTCCCCAATTTTTC

Basic information

species Glycine max
transcript GLYMA11G15480.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426586|gb|CA938106.1|CA938106
EST:     GATTTTTGGGTTGACCTTTTGAAATTCATGCCATGTCGGGGTTACTTAAT                         TCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCT
genomic: GATTTTTGGGTTGACCTTTTGAAATTCATGCCATGTCGGGGTTACTTAATgtattccctt ... ttccttgcagTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttttagcatgcctatcttaatttttaatcctagcagagttttccttgcagTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCTTTTGCTTCATCATTTTCTGGTCAGTCTGGTGCAGCCTCCCCAATTTTTC
                          ttttaat  putative branch site (score: 3)
                                           ttttccttgc  putative PPT
                 tatcttaatttttaat  TA-rich tract